PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG852600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 340aa    MW: 37364.1 Da    PI: 5.3951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG852600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.7e-12131179355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Pavir.9NG852600.1.p 131 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 179
                          58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.37E-12126183No hitNo description
SuperFamilySSF474591.31E-17126194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-18128195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9131179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MYSPPCTDPE SEDNQCFAIG TNLLASLDHG MDFDGPIVFP MNNVGVQEGV QLYNSAGDTQ  60
LSRNMNTGRC LKGGKRKGSG EDSSSLHSID ETGALLQREV SMECPDEKPG DAGTNREDYV  120
HVRAKRGQAT NSHSLAERFR REKINERMKL LQDLVPGCNK ITGKAMMLDE IINYVQSLQR  180
QVEFLSMKLS AISPELNRDL DLRDILCSQD AHAAFQGYSP QLSSVHLNLF RASQQGFSRP  240
EPYGMTPNPA NVHVARPVQQ LLQLPAFPQR GVVWDEEHRT IAPDAFTSDV GAGALENSCA  300
FPASPPLPCS AFFLQAAAAF NFVKFLKVHF DVTDSMKVE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.424770.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622160.0BT062216.1 Zea mays full-length cDNA clone ZM_BFb0227P23 mRNA, complete cds.
GenBankKJ7267920.0KJ726792.1 Zea mays clone pUT2278 bHLH transcription factor (bHLH3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698404.10.0PREDICTED: transcription factor bHLH76-like
RefseqXP_012698405.10.0PREDICTED: transcription factor bHLH76-like
TrEMBLK4AL410.0K4AL41_SETIT; Uncharacterized protein
STRINGSi039620m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-47bHLH family protein